set(BASELINE ${ITK_DATA_ROOT}/Baseline/Registration)
set(TEMP ${ITK_BINARY_DIR}/Testing/Temporary)

itk_add_test(
  NAME
  ImageRegistrationHistogramPlotterTest
  COMMAND
  ${ITK_TEST_DRIVER}
  --compareNumberOfPixelsTolerance
  30
  --compareIntensityTolerance
  10
  --compareRadiusTolerance
  10
  --compare
  DATA{${BASELINE}/JointEntropyHistogramAfterRegistration.png,:}
  ${TEMP}/JointEntropyHistogramAfterRegistration.png
  $<TARGET_FILE:ImageRegistrationHistogramPlotter>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainT1SliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/RegisteredImage.png
  0
  ${TEMP}/JointEntropyHistogramPriorToRegistration.png
  ${TEMP}/JointEntropyHistogramAfterRegistration.png
  512)
set_property(
  TEST ImageRegistrationHistogramPlotterTest
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  ImageRegistration1Test1
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration1TestPixelCentered.png}
  ${TEMP}/ImageRegistration1Test1PixelCentered.png
  $<TARGET_FILE:ImageRegistration1>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/ImageRegistration1Test1PixelCentered.png
  ${TEMP}/ImageRegistration1DifferenceAfterTest1PixelCentered.png
  ${TEMP}/ImageRegistration1DifferenceBeforeTest1PixelCentered.png)

itk_add_test(
  NAME
  ImageRegistration1Test2
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration1TestPixelCentered.png}
  ${TEMP}/ImageRegistration1Test2PixelCentered.png
  $<TARGET_FILE:ImageRegistration1>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/ImageRegistration1Test2PixelCentered.png
  ${TEMP}/ImageRegistration1DifferenceAfterTest2PixelCentered.png
  ${TEMP}/ImageRegistration1DifferenceBeforeTest2PixelCentered.png
  1)

itk_add_test(
  NAME
  ImageRegistration2Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration2Test.png}
  ${TEMP}/ImageRegistration2Test.png
  $<TARGET_FILE:ImageRegistration2>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainT1SliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/ImageRegistration2Test.png
  ${TEMP}/ImageRegistration2BeforeTest.png
  ${TEMP}/ImageRegistration2AfterTest.png)
set_property(
  TEST ImageRegistration2Test
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  ImageRegistration3Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration3TestPixelCentered.png}
  ${TEMP}/ImageRegistration3TestPixelCentered.png
  $<TARGET_FILE:ImageRegistration3>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/ImageRegistration3TestPixelCentered.png)

itk_add_test(
  NAME
  ImageRegistration4Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration4Test.png}
  ${TEMP}/ImageRegistration4Test.png
  $<TARGET_FILE:ImageRegistration4>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainT1SliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/ImageRegistration4Test.png
  0
  ${TEMP}/ImageRegistration4BeforeTest.png
  ${TEMP}/ImageRegistration4AfterTest.png
  24)

itk_add_test(
  NAME
  ImageRegistration4Test2
  COMMAND
  ${ITK_TEST_DRIVER}
  $<TARGET_FILE:ImageRegistration4>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20Mask.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20Mask.png
  ${TEMP}/ImageRegistration4Test2.png
  0
  ${TEMP}/ImageRegistration4BeforeTest2.png
  ${TEMP}/ImageRegistration4AfterTest2.png
  5)

itk_add_test(
  NAME
  ImageRegistration5Test1
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration5Test1PixelCentered.png}
  ${TEMP}/ImageRegistration5Test1PixelCentered.png
  --compareNumberOfPixelsTolerance
  115
  $<TARGET_FILE:ImageRegistration5>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceRotated10.png
  ${TEMP}/ImageRegistration5Test1PixelCentered.png)

itk_add_test(
  NAME
  ImageRegistration5Test2
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration5Test2PixelCentered.png}
  ${TEMP}/ImageRegistration5Test2PixelCentered.png
  $<TARGET_FILE:ImageRegistration5>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceR10X13Y17.png
  ${TEMP}/ImageRegistration5Test2PixelCentered.png
  ${TEMP}/ImageRegistration5Test2DifferenceAfter.png
  ${TEMP}/ImageRegistration5Test2DifferenceBefore.png
  1.3)

itk_add_test(
  NAME
  ImageRegistration6Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration6TestPixelCentered.png}
  ${TEMP}/ImageRegistration6TestPixelCentered.png
  --compareNumberOfPixelsTolerance
  100
  $<TARGET_FILE:ImageRegistration6>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceR10X13Y17.png
  ${TEMP}/ImageRegistration6TestPixelCentered.png)

itk_add_test(
  NAME
  ImageRegistration7Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration7TestPixelCentered.png}
  ${TEMP}/ImageRegistration7TestPixelCentered.png
  --compareNumberOfPixelsTolerance
  100
  $<TARGET_FILE:ImageRegistration7>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceR10X13Y17S12.png
  ${TEMP}/ImageRegistration7TestPixelCentered.png
  ${TEMP}/ImageRegistration7BeforeTestPixelCentered.png
  ${TEMP}/ImageRegistration7AfterTestPixelCentered.png
  1.0
  1.0
  0.0)

if(ITK_USE_BRAINWEB_DATA)

  ## A test needed to prepare for making the latex documentation.
  itk_add_test(
    NAME
    ConfidenceConnected3DTest
    COMMAND
    ${ITK_TEST_DRIVER}
    $<TARGET_FILE:ConfidenceConnected3D>
    DATA{../../Data/BrainWeb/brainweb165a10f17.mha}
    ${TEMP}/WhiteMatterSegmentation.mhd)

  itk_add_test(
    NAME
    ImageRegistration8Test
    COMMAND
    ${ITK_TEST_DRIVER}
    --compare
    DATA{${BASELINE}/ImageRegistration8RegisteredSlice.png}
    ${TEMP}/ImageRegistration8v4RegisteredSlice.png
    $<TARGET_FILE:ImageRegistration8>
    DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
    DATA{../../Data/BrainWeb/brainweb1e1a10f20Rot10Tx15.mha}
    ${TEMP}/ImageRegistration8v4Output.mhd
    ${TEMP}/ImageRegistration8v4DifferenceBefore.mhd
    ${TEMP}/ImageRegistration8v4DifferenceAfter.mhd
    ${TEMP}/ImageRegistration8v4Output.png
    ${TEMP}/ImageRegistration8v4DifferenceBefore.png
    ${TEMP}/ImageRegistration8v4DifferenceAfter.png
    ${TEMP}/ImageRegistration8v4RegisteredSlice.png)
  set_property(
    TEST ImageRegistration8Test
    APPEND
    PROPERTY LABELS RUNS_LONG)

  if(${CMAKE_BUILD_TYPE} MATCHES "Release")
    # This test is computationally demanding.
    # Therefore we only run it in a Release build
    itk_add_test(
      NAME
      ImageRegistration20Test
      COMMAND
      ${ITK_TEST_DRIVER}
      $<TARGET_FILE:ImageRegistration20>
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      DATA{../../Data/BrainWeb/brainweb1e1a10f20Rot10Tx15.mha}
      ${TEMP}/ImageRegistration20Output.mhd
      ${TEMP}/ImageRegistration20DifferenceBefore.mhd
      ${TEMP}/ImageRegistration20DifferenceAfter.mhd
      0.1 # Step length
      300 # maximum number of iterations
    )
    set_tests_properties(ImageRegistration20Test PROPERTIES RUN_SERIAL 1)
  endif()

endif()

itk_add_test(
  NAME
  ImageRegistration9Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration9TestPixelCentered.png}
  ${TEMP}/ImageRegistration9TestPixelCentered.png
  --compareNumberOfPixelsTolerance
  50
  $<TARGET_FILE:ImageRegistration9>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceR10X13Y17.png
  ${TEMP}/ImageRegistration9TestPixelCentered.png)

itk_add_test(
  NAME
  ImageRegistration10Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration10TestPixelCentered.png,:}
  ${TEMP}/ImageRegistration10TestPixelCentered.png
  $<TARGET_FILE:ImageRegistration10>
  DATA{${ITK_SOURCE_DIR}/Testing/Data/Baseline/Segmentation/WatershedSegmentation1Test1.png}
  DATA{${ITK_SOURCE_DIR}/Testing/Data/Baseline/Segmentation/WatershedSegmentation1Test2.png}
  ${TEMP}/ImageRegistration10TestPixelCentered.png
  ${TEMP}/ImageRegistration10DifferenceTestPixelCentered.png
  -11
  -13)

itk_add_test(
  NAME
  ImageRegistration13Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration13TestPixelCentered.png}
  ${TEMP}/ImageRegistration13TestPixelCentered.png
  --compareNumberOfPixelsTolerance
  35
  $<TARGET_FILE:ImageRegistration13>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceR10X13Y17.png
  ${TEMP}/ImageRegistration13TestPixelCentered.png)

itk_add_test(
  NAME
  ImageRegistration14Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration14Test.png,:}
  ${TEMP}/ImageRegistration14Test.png
  --compareNumberOfPixelsTolerance
  2000
  $<TARGET_FILE:ImageRegistration14>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceR10X13Y17.png
  ${TEMP}/ImageRegistration14Test.png
  32
  0.01
  0.1
  0.15
  10.0
  14.0)
set_property(
  TEST ImageRegistration14Test
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  ImageRegistration15Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration15TestPixelCentered.png}
  ${TEMP}/ImageRegistration15TestPixelCentered.png
  $<TARGET_FILE:ImageRegistration15>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/ImageRegistration15TestPixelCentered.png
  32
  0.1
  0.05
  0.0
  0.0)
set_property(
  TEST ImageRegistration15Test
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  ImageRegistration16Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration16TestPixelCentered.png}
  ${TEMP}/ImageRegistration16TestPixelCentered.png
  $<TARGET_FILE:ImageRegistration16>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/ImageRegistration16TestPixelCentered.png
  0.0
  0.0)

itk_add_test(
  NAME
  ImageRegistration16Test2
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration16TestPixelCentered.png}
  ${TEMP}/ImageRegistration16Test2PixelCentered.png
  $<TARGET_FILE:ImageRegistration16>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/ImageRegistration16Test2PixelCentered.png
  0.0
  0.0
  0)

itk_add_test(
  NAME
  ImageRegistration17Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration17TestPixelCentered.png,:}
  ${TEMP}/ImageRegistration17TestPixelCentered.png
  --compareNumberOfPixelsTolerance
  5
  $<TARGET_FILE:ImageRegistration17>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/ImageRegistration17TestPixelCentered.png
  0.0
  0.0)

itk_add_test(
  NAME
  ImageRegistration18Test
  COMMAND
  ImageRegistration18
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/ImageRegistration18Test.png
  0.0
  0.0)

itk_add_test(
  NAME
  ImageRegistration19Test
  COMMAND
  ImageRegistration19
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20Mask.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20Mask.png
  ${TEMP}/ImageRegistration19Test.png
  ${TEMP}/ImageRegistration19DifferenceTest.png
  2.0
  2.0 # Initial translation parameters
)

itk_add_test(
  NAME
  MultiResImageRegistration1Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/MultiResImageRegistration1Test.png,:}
  ${TEMP}/MultiResImageRegistration1Test.png
  --compareNumberOfPixelsTolerance
  100
  --compareIntensityTolerance
  7
  $<TARGET_FILE:MultiResImageRegistration1>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainT1SliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/MultiResImageRegistration1Test.png
  100
  ${TEMP}/MultiResImageRegistration1CheckerBoardBeforeTest.png
  ${TEMP}/MultiResImageRegistration1CheckerBoardAfterTest.png)
set_property(
  TEST MultiResImageRegistration1Test
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  MultiResImageRegistration1Test2
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/MultiResImageRegistration1Test.png,:}
  ${TEMP}/MultiResImageRegistration1Test2.png
  --compareNumberOfPixelsTolerance
  100
  --compareIntensityTolerance
  7
  $<TARGET_FILE:MultiResImageRegistration1>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainT1SliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/MultiResImageRegistration1Test2.png
  100
  ${TEMP}/MultiResImageRegistration1CheckerBoardBeforeTest2.png
  ${TEMP}/MultiResImageRegistration1CheckerBoardAfterTest2.png
  32)
set_property(
  TEST MultiResImageRegistration1Test2
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  MultiResImageRegistration2Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/MultiResImageRegistration2Test.png,:}
  ${TEMP}/MultiResImageRegistration2Test.png
  --compareNumberOfPixelsTolerance
  10000
  $<TARGET_FILE:MultiResImageRegistration2>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainT1SliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/MultiResImageRegistration2Test.png
  0
  ${TEMP}/MultiResImageRegistration2CheckerBoardBeforeTest.png
  ${TEMP}/MultiResImageRegistration2CheckerBoardAfterTest.png)
set_property(
  TEST MultiResImageRegistration2Test
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  MultiResImageRegistration2Test2
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/MultiResImageRegistration2Test.png,:}
  ${TEMP}/MultiResImageRegistration2Test2.png
  --compareNumberOfPixelsTolerance
  10000
  $<TARGET_FILE:MultiResImageRegistration2>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainT1SliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceShifted13x17y.png
  ${TEMP}/MultiResImageRegistration2Test2.png
  0
  ${TEMP}/MultiResImageRegistration2CheckerBoardBeforeTest2.png
  ${TEMP}/MultiResImageRegistration2CheckerBoardAfterTest2.png
  0)
set_property(
  TEST MultiResImageRegistration2Test2
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  MultiStageImageRegistration1Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration9TestPixelCentered.png,:}
  ${TEMP}/MultiStageImageRegistration1Test.png
  --compareNumberOfPixelsTolerance
  10000
  $<TARGET_FILE:MultiStageImageRegistration1>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainT1SliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceR10X13Y17.png
  ${TEMP}/MultiStageImageRegistration1Test.png
  100
  ${TEMP}/MultiStageImageRegistration1CheckerBoardBeforeTest.png
  ${TEMP}/MultiStageImageRegistration1CheckerBoardAfterTest.png)
set_property(
  TEST MultiStageImageRegistration1Test
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  MultiStageImageRegistration2Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration9TestPixelCentered.png,:}
  ${TEMP}/MultiStageImageRegistration2Test.png
  --compareNumberOfPixelsTolerance
  10000
  $<TARGET_FILE:MultiStageImageRegistration2>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainT1SliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceR10X13Y17.png
  ${TEMP}/MultiStageImageRegistration2Test.png
  100
  ${TEMP}/MultiStageImageRegistration2CheckerBoardBeforeTest.png
  ${TEMP}/MultiStageImageRegistration2CheckerBoardAfterTest.png)
set_property(
  TEST MultiStageImageRegistration2Test
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  DeformableRegistration2Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/DeformableRegistration2Test.png}
  ${TEMP}/DeformableRegistration2Test.png
  $<TARGET_FILE:DeformableRegistration2>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBSplined10.png
  ${TEMP}/DeformableRegistration2Test.png)

itk_add_test(
  NAME
  DeformableRegistration3Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/DeformableRegistration3Test.png,:}
  ${TEMP}/DeformableRegistration3Test.png
  --compareNumberOfPixelsTolerance
  100
  $<TARGET_FILE:DeformableRegistration3>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBSplined10.png
  ${TEMP}/DeformableRegistration3Test.png)

itk_add_test(
  NAME
  DeformableRegistration4Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{Baseline/DeformableRegistration1v4Test.png}
  ${TEMP}/DeformableRegistration4TestPixelCentered.png
  --compareNumberOfPixelsTolerance
  30
  --compareIntensityTolerance
  10
  $<TARGET_FILE:DeformableRegistration4>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBSplined10.png
  ${TEMP}/DeformableRegistration4TestPixelCentered.png)

itk_add_test(
  NAME
  DeformableRegistration5Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/DeformableRegistration5Test.png,:}
  ${TEMP}/DeformableRegistration5Test.png
  --compareNumberOfPixelsTolerance
  100
  --compareIntensityTolerance
  70
  $<TARGET_FILE:DeformableRegistration5>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBSplined10.png
  ${TEMP}/DeformableRegistration5Test.png)

itk_add_test(
  NAME
  DeformableRegistration6Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{Baseline/DeformableRegistration6v4Test.png}
  ${TEMP}/DeformableRegistration6Test.png
  --compareNumberOfPixelsTolerance
  20
  --compareIntensityTolerance
  70
  $<TARGET_FILE:DeformableRegistration6>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBSplined10.png
  ${TEMP}/DeformableRegistration6Test.png)
set_property(
  TEST DeformableRegistration6Test
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  BSplineWarping1Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{Baseline/BSplineWarping1Test.png}
  ${TEMP}/BSplineWarping1Test.png
  $<TARGET_FILE:BSplineWarping1>
  ${ITK_SOURCE_DIR}/Examples/Data/BSplineDisplacements1.txt
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${TEMP}/BSplineWarping1Test.png
  ${TEMP}/BSplineWarping1TestDisplacementField.mhd
  ${TEMP}/BSplineWarping1TestTransform.txt)

itk_add_test(
  NAME
  DeformableRegistration12Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{Baseline/DeformableRegistration12Test.png}
  ${TEMP}/DeformableRegistration12Test.png
  --compareNumberOfPixelsTolerance
  600
  $<TARGET_FILE:DeformableRegistration12>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  DATA{Baseline/BSplineWarping1Test.png}
  ${TEMP}/DeformableRegistration12Test.png
  ${TEMP}/DeformableRegistration12TestDifferenceAfter.png
  ${TEMP}/DeformableRegistration12TestDifferenceBefore.png
  ${TEMP}/DeformableRegistration12TestDisplacementField.mhd
  ${TEMP}/DeformableRegistration12TestFinalTransformParameters.txt)
set_property(
  TEST DeformableRegistration12Test
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  DeformableRegistration13Test1
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{Baseline/DeformableRegistration13Test.png}
  ${TEMP}/DeformableRegistration13Test1.png
  --compareNumberOfPixelsTolerance
  400
  $<TARGET_FILE:DeformableRegistration13>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  DATA{Baseline/BSplineWarping1Test.png}
  ${TEMP}/DeformableRegistration13Test1.png
  ${TEMP}/DeformableRegistration13Test1DifferenceAfter.png
  ${TEMP}/DeformableRegistration13Test1DifferenceBefore.png
  ${TEMP}/DeformableRegistration13Test1DisplacementField.mhd
  0
  0
  ${TEMP}/DeformableRegistration13Test1FinalTransformParameters.txt)
set_property(
  TEST DeformableRegistration13Test1
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  DeformableRegistration13Test2
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{Baseline/DeformableRegistration13Test.png}
  ${TEMP}/DeformableRegistration13Test2.png
  --compareNumberOfPixelsTolerance
  400
  $<TARGET_FILE:DeformableRegistration13>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  DATA{Baseline/BSplineWarping1Test.png}
  ${TEMP}/DeformableRegistration13Test2.png
  ${TEMP}/DeformableRegistration13Test2DifferenceAfter.png
  ${TEMP}/DeformableRegistration13Test2DifferenceBefore.png
  ${TEMP}/DeformableRegistration13Test2DisplacementField.mhd
  0
  1
  ${TEMP}/DeformableRegistration13Test2FinalTransformParameters.txt)

itk_add_test(
  NAME
  DeformableRegistration13Test3
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{Baseline/DeformableRegistration13Test.png}
  ${TEMP}/DeformableRegistration13Test3.png
  --compareNumberOfPixelsTolerance
  400
  $<TARGET_FILE:DeformableRegistration13>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  DATA{Baseline/BSplineWarping1Test.png}
  ${TEMP}/DeformableRegistration13Test3.png
  ${TEMP}/DeformableRegistration13Test3DifferenceAfter.png
  ${TEMP}/DeformableRegistration13Test3DifferenceBefore.png
  ${TEMP}/DeformableRegistration13Test3DisplacementField.mhd
  1
  0
  ${TEMP}/DeformableRegistration13Test3FinalTransformParameters.txt)
set_property(
  TEST DeformableRegistration13Test3
  APPEND
  PROPERTY LABELS RUNS_LONG)

itk_add_test(
  NAME
  DeformableRegistration13Test4
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{Baseline/DeformableRegistration13Test.png}
  ${TEMP}/DeformableRegistration13Test4.png
  --compareNumberOfPixelsTolerance
  400
  $<TARGET_FILE:DeformableRegistration13>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  DATA{Baseline/BSplineWarping1Test.png}
  ${TEMP}/DeformableRegistration13Test4.png
  ${TEMP}/DeformableRegistration13Test4DifferenceAfter.png
  ${TEMP}/DeformableRegistration13Test4DifferenceBefore.png
  ${TEMP}/DeformableRegistration13Test4DisplacementField.mhd
  1
  1
  ${TEMP}/DeformableRegistration13Test4FinalTransformParameters.txt)

if(ITK_USE_BRAINWEB_DATA)

  itk_add_test(
    NAME
    BSplineWarping2Test
    COMMAND
    ${ITK_TEST_DRIVER}
    $<TARGET_FILE:BSplineWarping2>
    ${ITK_SOURCE_DIR}/Examples/Data/BSplineDisplacements2.txt
    DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
    DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
    ${TEMP}/BSplineWarping2Test.mhd
    ${TEMP}/BSplineWarping2TestDisplacementField.mhd
    ${TEMP}/BSplineWarping2TestTransform.txt)
  set_property(
    TEST BSplineWarping2Test
    APPEND
    PROPERTY LABELS RUNS_LONG)
  set_property(
    TEST BSplineWarping2Test
    APPEND
    PROPERTY RUN_SERIAL True)

  set(NUMBER_OF_BSPLINE_GRID_NODES 5)

  if(CTEST_TEST_TIMEOUT GREATER 3000)

    itk_add_test(
      NAME
      DeformableRegistration8Test1
      COMMAND
      ${ITK_TEST_DRIVER}
      --compare
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/DeformableRegistration8Test1.mhd
      --compareNumberOfPixelsTolerance
      700000
      --compareIntensityTolerance
      15
      $<TARGET_FILE:DeformableRegistration8>
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/BSplineWarping2Test.mhd
      ${TEMP}/DeformableRegistration8Test1.mhd
      ${TEMP}/DeformableRegistration8Test1DifferenceAfter.mhd
      ${TEMP}/DeformableRegistration8Test1DifferenceBefore.mhd
      ${TEMP}/DeformableRegistration8Test1DisplacementField.mhd
      ${TEMP}/DeformableRegistration8Test1FinalTransformParameters.txt
      ${NUMBER_OF_BSPLINE_GRID_NODES}
      ${ITK_SOURCE_DIR}/Examples/Data/IdentityTransform.tfm)
    set_property(TEST DeformableRegistration8Test1 PROPERTY DEPENDS BSplineWarping2Test)
    set_property(
      TEST DeformableRegistration8Test1
      APPEND
      PROPERTY LABELS RUNS_LONG)

    itk_add_test(
      NAME
      DeformableRegistration14Test1
      COMMAND
      ${ITK_TEST_DRIVER}
      --compare
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/DeformableRegistration14Test1.mhd
      --compareNumberOfPixelsTolerance
      700000
      --compareIntensityTolerance
      15
      $<TARGET_FILE:DeformableRegistration14>
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/BSplineWarping2Test.mhd
      ${TEMP}/DeformableRegistration14Test1.mhd
      ${TEMP}/DeformableRegistration14Test1DifferenceAfter.mhd
      ${TEMP}/DeformableRegistration14Test1DifferenceBefore.mhd
      ${TEMP}/DeformableRegistration14Test1DisplacementField.mhd
      0
      0
      ${TEMP}/DeformableRegistration14Test1FinalTransformParameters.txt
      ${NUMBER_OF_BSPLINE_GRID_NODES}
      ${ITK_SOURCE_DIR}/Examples/Data/IdentityTransform.tfm
      10.0
      50)
    set_property(TEST DeformableRegistration14Test1 PROPERTY DEPENDS BSplineWarping2Test)
    set_property(
      TEST DeformableRegistration14Test1
      APPEND
      PROPERTY LABELS RUNS_LONG)

    itk_add_test(
      NAME
      DeformableRegistration14Test2
      COMMAND
      ${ITK_TEST_DRIVER}
      --compare
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/DeformableRegistration14Test2.mhd
      --compareNumberOfPixelsTolerance
      700000
      --compareIntensityTolerance
      15
      $<TARGET_FILE:DeformableRegistration14>
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/BSplineWarping2Test.mhd
      ${TEMP}/DeformableRegistration14Test2.mhd
      ${TEMP}/DeformableRegistration14Test2DifferenceAfter.mhd
      ${TEMP}/DeformableRegistration14Test2DifferenceBefore.mhd
      ${TEMP}/DeformableRegistration14Test2DisplacementField.mhd
      0
      1
      ${TEMP}/DeformableRegistration14Test2FinalTransformParameters.txt
      ${NUMBER_OF_BSPLINE_GRID_NODES}
      ${ITK_SOURCE_DIR}/Examples/Data/IdentityTransform.tfm
      10.0
      50)
    set_property(TEST DeformableRegistration14Test2 PROPERTY DEPENDS BSplineWarping2Test)
    set_property(
      TEST DeformableRegistration14Test2
      APPEND
      PROPERTY LABELS RUNS_LONG)

    itk_add_test(
      NAME
      DeformableRegistration14Test3
      COMMAND
      ${ITK_TEST_DRIVER}
      --compare
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/DeformableRegistration14Test3.mhd
      --compareNumberOfPixelsTolerance
      700000
      --compareIntensityTolerance
      15
      $<TARGET_FILE:DeformableRegistration14>
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/BSplineWarping2Test.mhd
      ${TEMP}/DeformableRegistration14Test3.mhd
      ${TEMP}/DeformableRegistration14Test3DifferenceAfter.mhd
      ${TEMP}/DeformableRegistration14Test3DifferenceBefore.mhd
      ${TEMP}/DeformableRegistration14Test3DisplacementField.mhd
      1
      0
      ${TEMP}/DeformableRegistration14Test3FinalTransformParameters.txt
      ${NUMBER_OF_BSPLINE_GRID_NODES}
      ${ITK_SOURCE_DIR}/Examples/Data/IdentityTransform.tfm
      10.0
      50)
    set_property(TEST DeformableRegistration14Test3 PROPERTY DEPENDS BSplineWarping2Test)
    set_property(
      TEST DeformableRegistration14Test3
      APPEND
      PROPERTY LABELS RUNS_LONG)

    itk_add_test(
      NAME
      DeformableRegistration14Test4
      COMMAND
      ${ITK_TEST_DRIVER}
      --compare
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/DeformableRegistration14Test4.mhd
      --compareNumberOfPixelsTolerance
      700000
      --compareIntensityTolerance
      15
      $<TARGET_FILE:DeformableRegistration14>
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/BSplineWarping2Test.mhd
      ${TEMP}/DeformableRegistration14Test4.mhd
      ${TEMP}/DeformableRegistration14Test4DifferenceAfter.mhd
      ${TEMP}/DeformableRegistration14Test4DifferenceBefore.mhd
      ${TEMP}/DeformableRegistration14Test4DisplacementField.mhd
      1
      1
      ${TEMP}/DeformableRegistration14Test4FinalTransformParameters.txt
      ${NUMBER_OF_BSPLINE_GRID_NODES}
      ${ITK_SOURCE_DIR}/Examples/Data/IdentityTransform.tfm
      10.0
      50)
    set_property(TEST DeformableRegistration14Test4 PROPERTY DEPENDS BSplineWarping2Test)
    set_property(
      TEST DeformableRegistration14Test4
      APPEND
      PROPERTY LABELS RUNS_LONG)

  endif() # CTEST_TEST_TIMEOUT GREATER 3000

  itk_add_test(
    NAME
    ChangeInformationTest1
    COMMAND
    ${ITK_TEST_DRIVER}
    $<TARGET_FILE:ChangeInformationImageFilter>
    DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
    ${TEMP}/BSplinedTranlatedScaledRotated.mhd
    1.05
    1.0
    2.0
    0.0
    10.0)

  if(CTEST_TEST_TIMEOUT GREATER 10000)
    itk_add_test(
      NAME
      DeformableRegistration15Test1
      COMMAND
      ${ITK_TEST_DRIVER}
      --compare
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/DeformableRegistration15Test1.mhd
      --compareNumberOfPixelsTolerance
      700000
      --compareIntensityTolerance
      15
      $<TARGET_FILE:DeformableRegistration15>
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/BSplinedTranlatedScaledRotated.mhd
      ${TEMP}/DeformableRegistration15Test1.mhd
      ${TEMP}/DeformableRegistration15Test1DifferenceAfter.mhd
      ${TEMP}/DeformableRegistration15Test1DifferenceBefore.mhd
      ${TEMP}/DeformableRegistration15Test1DisplacementField.mhd
      0
      0
      ${TEMP}/DeformableRegistration15Test1FinalTransformParameters.txt
      5
      100
      10.0
      50)
    set_property(TEST DeformableRegistration15Test1 PROPERTY DEPENDS ChangeInformationTest1)
    set_property(
      TEST DeformableRegistration15Test1
      APPEND
      PROPERTY LABELS RUNS_LONG)
  endif()

  if("${ITK_COMPUTER_MEMORY_SIZE}" GREATER 6)

    set(NUMBER_OF_BSPLINE_GRID_NODES 32)
    itk_add_test(
      NAME
      DeformableRegistration8Test2
      COMMAND
      ${ITK_TEST_DRIVER}
      $<TARGET_FILE:DeformableRegistration8>
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/BSplineWarping2Test.mhd
      ${TEMP}/DeformableRegistration8Test2.mhd
      ${TEMP}/DeformableRegistration8Test2DifferenceAfter.mhd
      ${TEMP}/DeformableRegistration8Test2DifferenceBefore.mhd
      ${TEMP}/DeformableRegistration8Test2DisplacementField.mhd
      ${TEMP}/DeformableRegistration8Test2FinalTransformParameters.txt
      ${NUMBER_OF_BSPLINE_GRID_NODES})
    set_property(TEST DeformableRegistration8Test2 PROPERTY DEPENDS BSplineWarping2Test)
    set_property(
      TEST DeformableRegistration8Test2
      APPEND
      PROPERTY LABELS RUNS_LONG)

    set(NUMBER_OF_BSPLINE_GRID_NODES 100)
    itk_add_test(
      NAME
      DeformableRegistration8Test3
      COMMAND
      ${ITK_TEST_DRIVER}
      $<TARGET_FILE:DeformableRegistration8>
      DATA{../../Data/BrainWeb/brainweb1e1a10f20.mha}
      ${TEMP}/BSplineWarping2Test.mhd
      ${TEMP}/DeformableRegistration8Test3.mhd
      ${TEMP}/DeformableRegistration8Test3DifferenceAfter.mhd
      ${TEMP}/DeformableRegistration8Test3DifferenceBefore.mhd
      ${TEMP}/DeformableRegistration8Test3DisplacementField.mhd
      ${TEMP}/DeformableRegistration8Test3FinalTransformParameters.txt
      ${NUMBER_OF_BSPLINE_GRID_NODES})
    set_property(TEST DeformableRegistration8Test3 PROPERTY DEPENDS BSplineWarping2Test)
    set_property(
      TEST DeformableRegistration8Test3
      APPEND
      PROPERTY LABELS RUNS_LONG)

    # Due to the large memory requirements this tests must be run one by one
    set_tests_properties(DeformableRegistration8Test2 DeformableRegistration8Test3 PROPERTIES RESOURCE_LOCK MEMORY_SIZE)

  endif() # ITK_COMPUTER_MEMORY_SIZE GREATER 6

endif() # ITK_USE_BRAINWEB_DATA

if(ITK_MRI_UNC_DATABASE_DATA_ROOT)

  if(CTEST_TEST_TIMEOUT GREATER 10000)
    itk_add_test(
      NAME
      DeformableRegistration15Test2
      COMMAND
      ${ITK_TEST_DRIVER}
      $<TARGET_FILE:DeformableRegistration15>
      ${ITK_MRI_UNC_DATABASE_DATA_ROOT}/b/I.hdr
      ${ITK_MRI_UNC_DATABASE_DATA_ROOT}/d/I.hdr
      ${TEMP}/DeformableRegistration15Test2.mhd
      ${TEMP}/DeformableRegistration15Test2DifferenceAfter.mhd
      ${TEMP}/DeformableRegistration15Test2DifferenceBefore.mhd
      ${TEMP}/DeformableRegistration15Test2DisplacementField.mhd
      0
      0
      ${TEMP}/DeformableRegistration15Test2FinalTransformParameters.txt
      5
      100
      10.0
      50)
    set_property(
      TEST DeformableRegistration15Test2
      APPEND
      PROPERTY LABELS RUNS_LONG)
  endif()

endif()

itk_add_test(
  NAME
  LandmarkWarping2Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/LandmarkWarping2Test.png}
  ${TEMP}/LandmarkWarping2Test.png
  $<TARGET_FILE:LandmarkWarping2>
  ${ITK_SOURCE_DIR}/Examples/Data/LandmarkWarping2Landmarks1.txt
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${TEMP}/LandmarkWarping2Test.png)
itk_add_test(
  NAME
  ImageRegistration12Test
  COMMAND
  ${ITK_TEST_DRIVER}
  --compare
  DATA{${BASELINE}/ImageRegistration12TestPixelCentered.png}
  ${TEMP}/ImageRegistration12TestPixelCentered.png
  --compareNumberOfPixelsTolerance
  2
  $<TARGET_FILE:ImageRegistration12>
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceR10X13Y17.png
  ${ITK_SOURCE_DIR}/Examples/Data/BrainProtonDensitySliceBorder20Mask.png
  ${TEMP}/ImageRegistration12TestPixelCentered.png)

itk_add_test(
  NAME
  ModelToImageRegistration2Test
  COMMAND
  ${ITK_TEST_DRIVER}
  $<TARGET_FILE:ModelToImageRegistration2>
  DATA{${ITK_SOURCE_DIR}/Testing/Data/Input/cake_easy.png}
  12
  12)
